Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs67665996 chr17:62985827 A/T 8.01E-9 488 30.87 31.37 19.63 KM Plot
PRAD rs677398 chr8:104004679 C/T 0.000181 488 31.13 28.93 16.58 KM Plot
PRAD rs67760891 chr5:178982091 G/A 2.98E-11 486 30.8 35.8 15.87 KM Plot
PRAD rs6780015 chr3:105502097 A/G 0.000127 485 31.27 28.93 53.67 KM Plot
PRAD rs6784397 chr3:169954857 A/C 8.63E-5 486 26.4 30.77 31.33 KM Plot
PRAD rs67935257 chr6:169302356 CCTT/C 1.26E-6 487 30.87 31.27 28.78 KM Plot
PRAD rs68012066 chr7:135070852 G/GT 1.78E-9 493 30.8 31.4 3.03 KM Plot
PRAD rs68054433 chr5:179033961 T/C 1.57E-12 485 30.75 35.67 18.88 KM Plot
PRAD rs6812295 chr4:189958158 A/G 5.38E-5 494 38.08 28.57 31.37 KM Plot
PRAD rs68126839 chr2:178794824 T/TTAGA 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs681859 chr8:103998626 C/T 0.000155 494 16.58 29.23 31.23 KM Plot
PRAD rs6851329 chr4:72303 A/G 7.78E-6 494 30.53 32.5 39.23 KM Plot
PRAD rs6858112 chr4:187062426 A/G 1.24E-6 494 28.07 28.3 31.2 KM Plot
PRAD rs6868691 chr5:7303877 G/A 0.000136 473 30.87 32.47 24.85 KM Plot
PRAD rs6870207 chr5:171529721 A/G 6.06E-7 484 30.8 32 13.17 KM Plot